Treatment of TK2 Deficiency With Thymidine and Deoxycytidine

Phase 1

Active, not recruiting

• Conditions: Thymidine Kinase 2 Deficiency; Mitochondrial DNA Depletion Syndrome 2 Myopathic Type
• Interventions: Drug: Thymidine

• Registration Number: NCT03639701
• Lead Sponsor: Columbia University

Brief Summary

Patients with confirmed mitochondrial DNA depletion syndrome 2 (thymidine kinase 2 \[TK2\] deficiency) have reduced levels of nucleotides (deoxythymidine monophosphate and deoxycytidine monophosphate) for mitochondrial DNA synthesis. This results in mitochondrial DNA depletion syndrome (i.e less number of functional mitochondrial DNA). Patients with confirmed TK2 deficiency will be treated with open label deoxythymidine (dThd) and deoxycytidine (dCyt), which are nucleotide precursors, with the expectation that the cells could make additional mitochondrial DNA. This in turn may help reduce the clinical symptoms.

Detailed Description

Mitochondrial are responsible for the production of cellular energy. Mitochondria contain DNA which is the encoding system ( "recipe") for making the proteins that allow the mitochondria to function. Reduced amount of mitochondrial DNA, caused by genetic mutations in certain genes, Mitochondrial DNA Depletion Syndrome. This can result in symptoms; such as fatigue, weakness, and deficiencies in various body systems. TK2 deficiency is considered a mitochondrial depletion syndrome. Patients with TK2 deficiency have weakness and walking difficulty. They also have depleted levels of chemicals (phosphorylated deoxythymidine and deoxycytidine) used to make mitochondrial DNA. Based on previous studies with a similar compound, patients reported more energy and better motor skills.

Eligible patients include those with genetic mutations in the TK2 gene who are willing to attend several outpatient visits, and have motor skills testing, neurological exam by doctor, and blood samples.

Basic Information
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Recruitment & Eligibility
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Study & Design
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Trial Locations

Study Timeline

• Study Start: 2017-05-16
• Study First Submitted: 2018-08-07
• Study First Submitted QC: 2018-08-18
• Study First Posted: 2018-08-21
• Status Verified: 2024-01
• Last Update Submitted: 2024-01-19
• Last Update Posted: 2024-01-22
• Primary Completion: 2025-04
• Study Completion: 2025-04

Recruitment & Eligibility

• Status: ACTIVE_NOT_RECRUITING
• Sex: All
• Target Recruitment: 23

Inclusion Criteria

• Genetically confirmed diagnosis of TK2 deficiency
• Deemed by principle investigator to be symptomatic with TK2 deficiency
• Single gene disease; absence of polygenic disease
• Hematocrit within normal range for age group
• Patient or patient's guardian able to consent and comply with protocol requirements
• Presence of caregiver to ensure study compliance (if needed)
• Abstention from use of all pill-form dietary supplements and non-prescribed medications (except as allowed by the investigator)
• Abstention from use of other investigational medications or other medications according to the study investigator

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Exclusion Criteria

• Clinical history of bleeding or abnormal prothrombin time (PT)/partial thromboplastin time (PTT)
• Hepatic insufficiency with liver function tests (LFTs) greater than two times normal
• Renal insufficiency requiring dialysis
• Any other concurrent inborn errors of metabolism
• Severe end-organ hypo-perfusion syndrome secondary to cardiac failure resulting in lactic acidosis

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Study & Design

• Study Type: INTERVENTIONAL
• Study Design: SINGLE_GROUP

Arm && Interventions

Group	Intervention	Description
Open label thymidine and deoxycytidine	Thymidine	All patients will receive open label thymidine and deoxycytidine

Primary Outcome Measures

Name	Time	Method
Alanine aminotransferase	Up to 60 months	Number of participants with treatment-related elevated alanine aminotransferase (ALT) serum level relative to upper limit of normal (expressed as ratios) grade 3 or higher as defined by CTCAE 4.03.
Aspartate aminotransferase	Up to 60 months	Number of participants with treatment-related elevated aspartate aminotransferase (AST) serum level relative to upper limit of normal (expressed as ratios) grade 3 or higher as defined by CTCAE 4.03.
Gamma-glutamyltransferase	Up to 60 months	Number of participants with treatment-related elevated gamma-glutamyltransferase (GGT) serum level relative to upper limit of normal (expressed as ratios) grade 3 or higher as defined by CTCAE 4.03.
Blood lymphocyte count	Up to 60 months	Blood lymphocyte count increased relative to upper limit or normal or decreased relative to lower limit of normal (expressed as ratios) grade 3 or higher as defined by CTCAE 4.03.
Creatinine	Up to 60 months	Serum creatinine level increased relative to upper limit of normal (expressed as ratios) grade 3 or higher as defined by CTCAE 4.03.
Electrocardiogram	Up to 60 months	Number of patients with treatment related electrocardiogram (ECG) QT corrected interval (QTc) grade 3 or higher as defined by CTCAE version 4.03.
Diarrhea	Up to 60 months	Patient-Reported Outcome Measurement Information System (PROMIS) Scale v1.0 - Gastrointestinal Diarrhea 6a score (score range 0-30 with higher scores indicating more severe diarrhea)

Secondary Outcome Measures

Name	Time	Method
Event-free survival	Up to 60 months	Time to mechanical ventilation, death, or both will be assessed.
6-minute walk test	Up to 60 months	Distance walked in meters over 6 minutes will be measured in ambulatory patient.
Children's Hospital of Philadelphia Infant Test of Neuromuscular Disorders (CHOP INTEND)	Up to 60 months	Children's Hospital of Philadelphia Infant Test of Neuromuscular Disorders (CHOP INTEND) score (0-64 point range with higher scores indicating better function) will be assessed in infants to assess motor function.
Hammersmith Functional Motor Scale Expanded (HFMSE)	Up to 60 months	Hammersmith Functional Motor Scale Expanded (HFMSE) score (0-66 point range with higher scores indicating better function) will be measured in subjects \>1 year-old.
Vital Capacity	Up to 60 months	Vital capacity (percent of predicted normal based on age and height) will be measure by spirometry
Time on Mechanical Ventilation	Up to 60 months	Number of hours per day that subjects use mechanical ventilation will be recorded.
euro Quality of Life (Neuro-QoL) in adults	Up to 60 months	Neuro Quality of Life (Neuro-QoL) short forms will be used to assess effects of muscle weakness on motor function and activities of daily living. In adults, Lower and Upper Extremity scales will be assessed (0-80 points with higher scores indicating better function).
Neuro Quality of Life (Neuro-QoL) in pediatric subjects	Up to 60 months	Neuro Quality of Life (Neuro-QoL) forms will be used to assess effects of muscle weakness on motor function and activities of daily living. In pediatric subjects (\<18 years-old), Lower and Upper Extremity scales will be assessed (0-160 points with higher scores indicating better function).
Suicidal Ideation	Up to 60 months	Suicidal ideation will be assessed by the Columbia-Suicide Severity Rating Scale (C-SSRS), which contains 6 "yes" or "no" questions. Answer of "yes" to any question indicates possible suicide risk and answer of "yes: to questions 4, 5, or 6 indicates high-risk.

Trial Locations

Locations (1)

Columbia University Irving Medical Center; 🇺🇸 New York, New York, United States