Association Between Single Nucleotide Polymorphisms in TLR4, LTA and RFP175 Genes and Susceptibility to Invasive Bacterial Infections in Infants Under 3 Months of Age
试验速览
- 阶段
- 不适用
- 状态
- 已完成
- 入组人数
- 200
- 试验地点
- 2
- 主要终点
- Correlation between specific gene polymorphisms and the occurrence of invasive bacterial infections in infants under 3 months
研究概览
简要总结
Invasive bacterial infections (IBIs) are globally significant, with high mortality rates, particularly within the critical 0-3 month age bracket. The first three months of life mark a peak in IBI prevalence, with an estimated 10-20% of febrile presentations in this age group resulting in an IBI diagnosis. Although multiple factors are implicated in this heightened vulnerability, the precise mechanisms driving the differential development of IBIs among similarly situated infants remain unclear. Genetic diversity and susceptibility are increasingly recognized as influential factors. Extensive literature demonstrates a correlation between genetic polymorphisms and susceptibility to invasive bacterial infections.
This study aims to explore the association of gene polymorphisms TLR4 rs2149356 (c.261-468T>G), LTA rs2229094 (c.37T>C), and RFP175 rs1585110 (c.246+8853G>A) with the occurrence of invasive bacterial infections in the population of children aged under 3 months.
We conducted a prospective observational study at a leading tertiary care hospital. The cohort included 100 infants aged 0-3 months diagnosed with IBIs alongside 100 control infants presenting for non-infectious conditions such as trauma, infantile colic, and hyperbilirubinemia. Cases with any symptoms suggesting an infection were excluded from the control group. Invasive bacterial infections categorized in this study included meningitis, pneumonia, sepsis, bacteremia, urinary tract infections, and invasive bacterial gastroenteritis. Diagnostic criteria were stringent: meningitis was confirmed via signs of bacterial infection in cerebrospinal fluid; pneumonia through auscultatory findings and radiographic evidence of pulmonary infiltrates; bacteremia by positive blood cultures; urinary tract infections by significant bacterial cultures from sterile catheterization; and gastroenteritis by the identification of pathogenic organisms in stool cultures. No additional blood was taken from the patients for the study. Instead, blood samples that were collected for tests determined by the physicians due to the patients' condition in the emergency department were retrieved from the laboratory after the requested tests were completed and reused for the study.
详细描述
We conducted a prospective observational study at a leading tertiary care hospital in Turkey. The cohort included 100 infants aged 0-3 months diagnosed with IBIs alongside 100 control infants presenting for non-infectious conditions. Ethical approval was secured from the institutional review board in compliance with the Declaration of Helsinki. Informed consent was obtained in written form from the parents or legal guardians of all participants prior to enrollment.
Invasive bacterial infections categorized in this study included meningitis, pneumonia, sepsis, bacteremia, urinary tract infections, and invasive bacterial gastroenteritis. Diagnostic criteria were stringent: meningitis was confirmed via signs of bacterial infection in cerebrospinal fluid; pneumonia through auscultatory findings and radiographic evidence of pulmonary infiltrates; bacteremia by positive blood cultures; urinary tract infections by significant bacterial cultures from sterile catheterization; and gastroenteritis by the identification of pathogenic organisms in stool cultures.
DNA was extracted from whole blood samples using the QIAamp DNA Mini Kit (Qiagen), according to the manufacturer's instructions. The purity and concentration of the DNA were quantified using a NanoDrop ND-1000 Spectrophotometer. Only DNA samples that met the quality and concentration criteria proceeded to sequencing. The sequence analysis targeted specific regions pertinent to the polymorphisms identified in the study's objectives.
DNA samples were processed using a sequence of analytical techniques to identify the polymorphisms TLR4 rs2149356 (c.261-468T>G), LTA rs2229094 (c.37T>C), and RFP175 rs1585110 (c.246+8853G>A), as detailed in our previous work [18]:
Primers targeting the regions encompassing TLR4 rs2149356 (c.261-468T>G), LTA rs2229094 (c.37T>C), and RFP175 rs1585110 (c.246+8853G>A) were designed using the Primer3 web tool. Criteria for primer design included a length of 18-24 base pairs, GC content between 30-50%, specificity to the target DNA region, and a melting temperature (Tm) ranging from 58-62 °C to ensure optimal amplification of a 300-500 base pair region.
研究设计
- 研究类型
- Interventional
- 分配方式
- Na
- 干预模型
- Single Group
- 主要目的
- Screening
- 盲法
- None
入排标准
- 年龄范围
- 1 Day 至 3 Months(Child)
- 性别
- All
- 接受健康志愿者
- 是
入选标准
- •Infants aged between 1 day and 90 days (under 3 months)
- •Hospitalized for evaluation of suspected invasive bacterial infections
- •Informed consent obtained from parent(s) or legal guardian(s)
- •Blood, urine, cerebrospinal fluid (CSF), or stool samples collected within 72 hours of admission
- •Genetic material (blood sample) available for DNA extraction
排除标准
- •Known or suspected congenital immunodeficiency
- •Previous diagnosis of genetic syndromes affecting immune function
- •Major congenital anomalies or chromosomal abnormalities
- •Antibiotic therapy initiated more than 24 hours before sample collection
- •Parental refusal to participate or withdraw consent
研究组 & 干预措施
gene polymorphisms
The cohort included 100 infants aged 0-3 months diagnosed with IBIs alongside 100 control infants presenting for non-infectious conditions.
干预措施: Specific single nucleotide polymorphisms (Other)
结局指标
主要结局
Correlation between specific gene polymorphisms and the occurrence of invasive bacterial infections in infants under 3 months
时间窗: 2 weeks
This outcome measures the correlation between the presence of the following gene polymorphisms: TLR4 rs2149356 (c.261-468T\>G), LTA rs2229094 (c.37T\>C), and RFP175 rs1585110 (c.246+8853G\>A), and the occurrence of laboratory-confirmed invasive bacterial infections (IBI) in infants aged \<3 months. Genotyping will be performed using PCR-based methods. IBIs will be categorized into one or more of the following based on predefined diagnostic criteria: Meningitis: confirmed by cerebrospinal fluid (CSF) pleocytosis and laboratory indicators of bacterial infection in CSF. Pneumonia: diagnosed based on auscultatory findings and radiographic evidence of pulmonary infiltrates. Sepsis and bacteremia: identified by positive blood cultures. Urinary tract infection: defined by a significant number of bacterial colonies in urine obtained by sterile catheterization. Invasive bacterial gastroenteritis: diagnosed by isolation of pathogenic bacteria in stool cultures.
次要结局
未报告次要终点
研究者
Caner Turan
Associate Professor
Ege University
