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Clinical Trials/NCT06614140
NCT06614140
Completed
Phase 1

A Phase I/IIb Study of Personalized Neoantigen Peptide-Based Cancer Vaccine for Patients With Solid Tumors

Seqker Biosciences, Inc.2 sites in 1 country8 target enrollmentNovember 24, 2022

Overview

Phase
Phase 1
Intervention
Personalized Neoantigen Peptide Vaccine with Poly-ICLC and Checkpoint Inhibitors
Conditions
Cancer
Sponsor
Seqker Biosciences, Inc.
Enrollment
8
Locations
2
Primary Endpoint
Safety of the Personalized Neoantigen Peptide Vaccine
Status
Completed
Last Updated
10 days ago

Overview

Brief Summary

This clinical trial aims to evaluate the safety, immunogenicity, and preliminary efficacy of a personalized neoantigen peptide vaccine in patients with advanced cancer or at high risk of recurrence. The study is designed for patients whose tumors have specific mutations identifiable through genomic sequencing. These mutations, known as neoantigens, are unique to each patient's cancer and serve as the target for the personalized vaccine.

Eligible patients will undergo genomic analysis, including whole exome sequencing and RNA sequencing, to identify these neoantigens. A custom peptide vaccine will then be produced and formulated to target these neoantigens. The trial consists of a preparation phase, a treatment phase with priming and booster vaccinations, and a follow-up/maintenance period of one year. The study will assess immune responses, clinical efficacy, and potential toxicities. By leveraging the immune system's ability to recognize and attack cancer cells, this vaccine aims to provide a new treatment option for patients with limited alternatives.

Detailed Description

This Phase Ib/II, open-label, single-center study investigates the safety, immunogenicity, and preliminary efficacy of a personalized neoantigen peptide vaccine in patients with advanced cancer or high risk of recurrence. The trial aims to enroll 15-35 eligible patients and is divided into three phases: preparation, treatment, and follow-up. Preparation Phase: Patients undergo genomic analysis using whole exome sequencing and RNA sequencing to identify specific neoantigens from their tumor tissues. Based on these findings, a personalized neoantigen peptide vaccine is produced and formulated. Poly-ICLC, an immune adjuvant, is administered intramuscularly twice weekly for four weeks prior to the first vaccine dose to enhance immune readiness. Treatment Phase: The neoantigen peptide vaccine is administered alongside Poly-ICLC on days 1, 4, 8, 15, and 22. A checkpoint inhibitor (e.g., anti-PD-1 or anti-PD-L1) will be introduced once neoantigen-specific T cell responses are detected, to prevent immune exhaustion and sustain the immune response. Booster injections of the neoantigen vaccine are scheduled for weeks 12 and 20. Immune responses and adverse events will be closely monitored throughout this phase. Follow-up Phase: During the follow-up phase, checkpoint inhibitors (administered per standard regimen) and Poly-ICLC (administered twice monthly) will be continued to maintain immune activity and ensure a lasting anti-tumor response. Safety, immune activity, and clinical outcomes will be closely monitored over a one-year period. The primary endpoints include safety and immunogenicity, measured by adverse event monitoring and T-cell activation assays. Secondary endpoints will assess clinical efficacy, including tumor response rates, progression-free survival, and overall survival. Exploratory endpoints will involve biomarker analysis and immune profiling to correlate clinical outcomes with specific immune responses. This study aims to validate the hypothesis that personalized neoantigen peptide vaccines, in combination with immune adjuvants and checkpoint inhibitors, can elicit strong immune responses and improve clinical outcomes in patients with advanced or high-risk recurrent cancers, especially where standard therapies have failed.

Registry
clinicaltrials.gov
Start Date
November 24, 2022
End Date
August 15, 2025
Last Updated
10 days ago
Study Type
Interventional
Study Design
Single Group
Sex
All

Investigators

Sponsor
Seqker Biosciences, Inc.
Responsible Party
Sponsor

Eligibility Criteria

Inclusion Criteria

  • Cancer patients will be selected from those receiving treatment at the Cancer Center, Vejthani Hospital. All participants must meet the following criteria:
  • Cancer patients must be aged 18 years or older.
  • Patients must provide informed consent and voluntarily agree to participate in the study.
  • Patients must have an estimated life expectancy of at least 6 months.
  • Patients must have an Eastern Cooperative Oncology Group (ECOG) performance status of 0-1 and normal functioning of internal organs.
  • Patients must have been diagnosed with cancer based on clinical presentation and confirmed by pathological evidence, including diagnostic imaging.
  • Specific criteria for the cancer type under study:
  • Advanced-stage cancer: No available standard treatment, resistant to standard therapies, and/or the patient is ineligible or refuses standard treatments.
  • Early-stage cancer with high recurrence risk: Even after surgery and/or radiation therapy and completion of standard treatment, the cancer has a high risk of recurrence, and there is no clear adjuvant treatment available.
  • Patients must have tumor tissue suitable for analysis and production of neoantigen peptides.

Exclusion Criteria

  • Cancer patients will not be eligible to participate in the study if they meet any of the following conditions:
  • Patients with a known history of allergy to peptide vaccines.
  • Patients with a history of autoimmune disease.
  • Patients who have received chemotherapy or radiation therapy less than 4 weeks prior to enrollment or as determined by the physician. This also includes patients with unresolved side effects from previous treatment graded ≥2 (CTCAE v4.0).
  • Patients with cancer that has metastasized to the brain or central nervous system, unless they have been treated and the metastases are controlled, and have been off steroids for at least 4 weeks.
  • Patients with a history of another malignancy within the past 2 years, except for locally treated basal cell or squamous cell skin cancer.
  • Patients with a history of Human Immunodeficiency Virus (HIV) infection.
  • Patients with a history of Hepatitis B or C infection. For those without prior history, screening will be conducted. Patients who test positive for Hepatitis B (HBsAg) or Hepatitis C (HCV) will be excluded unless:
  • Hepatitis B is controlled with antiviral treatment, as evidenced by an undetectable viral load.
  • Hepatitis C has been treated and the viral load is undetectable.

Arms & Interventions

Personalized Neoantigen Peptide Vaccine with Poly-ICLC and Checkpoint Inhibitors

Participants will receive a personalized neoantigen peptide vaccine based on tumor-specific mutations identified through genomic analysis. The treatment has three phases: Preparation Phase: Poly-ICLC, an immune adjuvant, is given intramuscularly twice weekly for four weeks before the first vaccine dose to enhance immune readiness. Treatment Phase: The neoantigen vaccine is administered with Poly-ICLC on days 1, 4, 8, 15, and 22. A checkpoint inhibitor (e.g., anti-PD-1 or anti-PD-L1) will be introduced after neoantigen-specific T cell responses are detected to counteract immune exhaustion. Booster injections are given at weeks 12 and 20. Follow-up Phase: Checkpoint inhibitors (per standard regimen) and Poly-ICLC (twice monthly) will be continued to maintain the immune response. Safety, immune activity, and clinical outcomes will be closely monitored.

Intervention: Personalized Neoantigen Peptide Vaccine with Poly-ICLC and Checkpoint Inhibitors

Outcomes

Primary Outcomes

Safety of the Personalized Neoantigen Peptide Vaccine

Time Frame: From the start of treatment through the follow-up phase (up to 18 months).

Safety will be assessed by monitoring the incidence, frequency, severity, and type of adverse events (AEs) and serious adverse events (SAEs) throughout the study, graded according to the Common Terminology Criteria for Adverse Events (CTCAE).

Immunogenicity of the Personalized Neoantigen Peptide Vaccine

Time Frame: From the start of treatment through the follow-up phase (up to 18 months).

Immunogenicity will be measured by evaluating T-cell responses specific to the neoantigen peptides in the peripheral blood of patients. Assays such as ELISpot and flow cytometry will be used to quantify neoantigen-specific T cells before and after vaccine administration to assess the vaccine's ability to stimulate an immune response.

Secondary Outcomes

  • Tumor Response Rate (Objective Response Rate) based on mRECIST 1.1(From the start of treatment until disease progression or up to 18 months, whichever occurs first.)
  • Progression-Free Survival (PFS)(From the start of treatment until disease progression, death, or up to 24 months, with follow-up beyond the primary study time frame for long-term evaluation.)
  • Overall Survival (OS)(From the start of treatment until death, last follow-up, or up to 5 years, with long-term follow-up beyond the primary study time frame to assess overall survival trends.)

Study Sites (2)

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