• Analysis of circulating tumor DNA (ctDNA) in HER2-low metastatic breast cancer (MBC) identifies frequent mutations in TP53, PIK3CA, and ESR1.
• HER2-low MBC exhibits distinct mutation profiles compared to HER2-0 and HER2-positive MBC, with differences in genes like ERBB2, AKT1, and ESR1.
• HER2-low MBC patients with ERBB2 mutations may benefit from HER2-TKI treatment, while those with metabolic pathway-related gene mutations show improved outcomes with chemotherapy and endocrine therapy.
• Molecular clustering of HER2-low MBC reveals distinct subgroups with varying mutation frequencies in RTK–RAS, PI3K, ERBB2, and metabolic pathways, suggesting potential for tailored therapies.