Search for Structural Variants in Patients With DSD and Inconclusive Molecular Diagnosis

Not Applicable

Recruiting

• Conditions: Disorder of Sex Development, 46,XY
• Interventions: Diagnostic Test: Identify structural variants by Optical Genome Mapping of DNA extracted from blood leukocytes

• Registration Number: NCT05867979
• Lead Sponsor: University Hospital, Montpellier

Brief Summary

The goal of this clinical trial is to identify structural variants by Optical Genome Mapping (OGM) in the described participant population.

The main questions it aims to answer are:

* Identify constitutional structural variants by OGM of DNA extracted from blood leukocytes of patients with DSD for which the molecular diagnosis is inconclusive.

* Identify mosaic structural variants (present in a subpopulation of somatic cells only) by OGM of DNA extracted from blood leukocytes of patients with DSD for which the molecular diagnosis is inconclusive.

* Compare the diagnostic yields of OGM and of Comparative Genome Hybridization Array (CGH array) methods.

* Compare the diagnostic yields of the OGM and of Whole Genome Sequencing (National Sequencing Program), only if performed.

Participants will be required to:

* a follow-up interview with a physician to review their own and family medical and surgical history, with a focusing on DSD.

* An interview to assess their exposure to environmental pollutants during fetal life, using a validated questionnaire.

* a blood test with a 5mL tube to perform optical genome mapping analysis.

Detailed Description

Patients with severe or moderate disorder of sex development (DSD) with a inconclusive molecular diagnosis will benefit from optical genome mapping analysis.

A venous blood sample on ethylenediaminetetraacetic acid (EDTA) tube (5mL) will be taken in order to extract the DNA that will be used for the optical genome mapping analysis.

Study Timeline

• Study First Submitted: 2023-05-02
• Study First Submitted QC: 2023-05-11
• Study First Posted: 2023-05-22
• Status Verified: 2024-02
• Study Start: 2024-02-05
• Last Update Submitted: 2024-02-07
• Last Update Posted: 2024-02-09
• Primary Completion: 2025-06-15
• Study Completion: 2025-06-15

Recruitment & Eligibility

• Status: RECRUITING
• Sex: Male
• Target Recruitment: 20

Inclusion Criteria

• homogeneous XY male karyotype.
• patient at least 6 months old
• severe to moderate DSD (Prader 1 to 5) for which the molecular diagnosis is inconclusive after a gene panel analysis.

Exclusion Criteria

• subject with a homogeneous or mosaic XX, or monosomal X karyotype.
• subject with an aneuploidy.
• subject with a conclusive molecular diagnosis explaining the observed DSD (i.e. carrier of a causal genotype already well characterized by functional studies)

Study & Design

• Study Type: INTERVENTIONAL
• Study Design: SINGLE_GROUP

Arm && Interventions

Group	Intervention	Description
patients with DSD and inconclusive molecular diagnosis	Identify structural variants by Optical Genome Mapping of DNA extracted from blood leukocytes	The one arm of the study will have a venous blood draw as part of the research. 1 EDTA tube of 5mL will be collected.

Primary Outcome Measures

Name	Time	Method
Number of Participants with a constitutional structural variants detected by OGM	Day of inclusion	A structural variant, present at the constitutional state in leukocyte DNA, and considered as likely pathogenic or pathogenic, identified by OGM in at least one of the included patients.

Secondary Outcome Measures

Name	Time	Method
Number of Participants with mosaic structural variants detected by OGM	Day of inclusion	A structural variant, present at the mosaic state in leukocyte DNA (i.e. allelic imbalance less than 0.40), and considered as likely pathogenic or pathogenic, identified by OGM in at least one of the included patients.

Trial Locations

Locations (1)

University Hospital Montpellier; 🇫🇷 Montpellier, France